Non-invasive prostate cancer detection from MRI has the potential to revolutionize patient care by providing early detection of clinically-significant disease (ISUP grade group >= 2), but has thus far shown limited positive predictive value. To address this, we present an MRI-based deep learning method for predicting clinically significant prostate cancer applicable to a patient population with subsequent ground truth biopsy results ranging from benign pathology to ISUP grade group~5. Specifically, we demonstrate that mixed supervision via diverse histopathological ground truth improves classification performance despite the cost of reduced concordance with image-based segmentation. That is, where prior approaches have utilized pathology results as ground truth derived from targeted biopsies and whole-mount prostatectomy to strongly supervise the localization of clinically significant cancer, our approach also utilizes weak supervision signals extracted from nontargeted systematic biopsies with regional localization to improve overall performance. Our key innovation is performing regression by distribution rather than simply by value, enabling use of additional pathology findings traditionally ignored by deep learning strategies. We evaluated our model on a dataset of 973 (testing n=160) multi-parametric prostate MRI exams collected at UCSF from 2015-2018 followed by MRI/ultrasound fusion (targeted) biopsy and systematic (nontargeted) biopsy of the prostate gland, demonstrating that deep networks trained with mixed supervision of histopathology can significantly exceed the performance of the Prostate Imaging-Reporting and Data System (PI-RADS) clinical standard for prostate MRI interpretation.
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机器学习,特别是深度学习方法在许多模式识别和数据处理问题,游戏玩法中都优于人类的能力,现在在科学发现中也起着越来越重要的作用。机器学习在分子科学中的关键应用是通过使用密度函数理论,耦合群或其他量子化学方法获得的电子schr \“ odinger方程的Ab-Initio溶液中的势能表面或力场。我们回顾了一种最新和互补的方法:使用机器学习来辅助从第一原理中直接解决量子化学问题。具体来说,我们专注于使用神经网络ANSATZ功能的量子蒙特卡洛(QMC)方法,以解决电子SCHR \ “ Odinger方程在第一和第二量化中,计算场和激发态,并概括多个核构型。与现有的量子化学方法相比,这些新的深QMC方法具有以相对适度的计算成本生成高度准确的Schr \“ Odinger方程的溶液。
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在许多反应流系统中,已知或假定热化学状态空间与低维歧管(LDM)相近。可以使用各种方法来获取这些歧管,并随后表达具有更少参数化变量的原始高维空间。主成分分析(PCA)是可用于获得LDM的维度降低方法之一。 PCA没有对参数化变量做出事先假设,并从训练数据中凭经验检索它们。在本文中,我们表明将PCA应用于局部数据簇(本地PCA)能够检测热化学状态空间的内在参数化。我们首先证明,使用三种不同复杂性的共同燃烧模型:Burke-Schumann模型,化学平衡模型和均匀反应器。这些模型的参数化已知先验,可以通过本地PCA方法进行基准测试。我们进一步将本地PCA的应用扩展到更具挑战性的案例,即湍流的非原型$ n $ heptane/air喷气火焰,该燃料不再显而易见。我们的结果表明,对于更复杂的数据集也可以获得有意义的参数化。我们表明,局部PCA找到可以链接到局部化学计量,反应进度和烟灰形成过程的变量。
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Process monitoring and control are essential in modern industries for ensuring high quality standards and optimizing production performance. These technologies have a long history of application in production and have had numerous positive impacts, but also hold great potential when integrated with Industry 4.0 and advanced machine learning, particularly deep learning, solutions. However, in order to implement these solutions in production and enable widespread adoption, the scalability and transferability of deep learning methods have become a focus of research. While transfer learning has proven successful in many cases, particularly with computer vision and homogenous data inputs, it can be challenging to apply to heterogeneous data. Motivated by the need to transfer and standardize established processes to different, non-identical environments and by the challenge of adapting to heterogeneous data representations, this work introduces the Domain Adaptation Neural Network with Cyclic Supervision (DBACS) approach. DBACS addresses the issue of model generalization through domain adaptation, specifically for heterogeneous data, and enables the transfer and scalability of deep learning-based statistical control methods in a general manner. Additionally, the cyclic interactions between the different parts of the model enable DBACS to not only adapt to the domains, but also match them. To the best of our knowledge, DBACS is the first deep learning approach to combine adaptation and matching for heterogeneous data settings. For comparison, this work also includes subspace alignment and a multi-view learning that deals with heterogeneous representations by mapping data into correlated latent feature spaces. Finally, DBACS with its ability to adapt and match, is applied to a virtual metrology use case for an etching process run on different machine types in semiconductor manufacturing.
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There are multiple scales of abstraction from which we can describe the same image, depending on whether we are focusing on fine-grained details or a more global attribute of the image. In brain mapping, learning to automatically parse images to build representations of both small-scale features (e.g., the presence of cells or blood vessels) and global properties of an image (e.g., which brain region the image comes from) is a crucial and open challenge. However, most existing datasets and benchmarks for neuroanatomy consider only a single downstream task at a time. To bridge this gap, we introduce a new dataset, annotations, and multiple downstream tasks that provide diverse ways to readout information about brain structure and architecture from the same image. Our multi-task neuroimaging benchmark (MTNeuro) is built on volumetric, micrometer-resolution X-ray microtomography images spanning a large thalamocortical section of mouse brain, encompassing multiple cortical and subcortical regions. We generated a number of different prediction challenges and evaluated several supervised and self-supervised models for brain-region prediction and pixel-level semantic segmentation of microstructures. Our experiments not only highlight the rich heterogeneity of this dataset, but also provide insights into how self-supervised approaches can be used to learn representations that capture multiple attributes of a single image and perform well on a variety of downstream tasks. Datasets, code, and pre-trained baseline models are provided at: https://mtneuro.github.io/ .
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The purpose of this work was to tackle practical issues which arise when using a tendon-driven robotic manipulator with a long, passive, flexible proximal section in medical applications. A separable robot which overcomes difficulties in actuation and sterilization is introduced, in which the body containing the electronics is reusable and the remainder is disposable. A control input which resolves the redundancy in the kinematics and a physical interpretation of this redundancy are provided. The effect of a static change in the proximal section angle on bending angle error was explored under four testing conditions for a sinusoidal input. Bending angle error increased for increasing proximal section angle for all testing conditions with an average error reduction of 41.48% for retension, 4.28% for hysteresis, and 52.35% for re-tension + hysteresis compensation relative to the baseline case. Two major sources of error in tracking the bending angle were identified: time delay from hysteresis and DC offset from the proximal section angle. Examination of these error sources revealed that the simple hysteresis compensation was most effective for removing time delay and re-tension compensation for removing DC offset, which was the primary source of increasing error. The re-tension compensation was also tested for dynamic changes in the proximal section and reduced error in the final configuration of the tip by 89.14% relative to the baseline case.
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An Anomaly Detection (AD) System for Self-diagnosis has been developed for Multiphase Flow Meter (MPFM). The system relies on machine learning algorithms for time series forecasting, historical data have been used to train a model and to predict the behavior of a sensor and, thus, to detect anomalies.
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Compliance in actuation has been exploited to generate highly dynamic maneuvers such as throwing that take advantage of the potential energy stored in joint springs. However, the energy storage and release could not be well-timed yet. On the contrary, for multi-link systems, the natural system dynamics might even work against the actual goal. With the introduction of variable stiffness actuators, this problem has been partially addressed. With a suitable optimal control strategy, the approximate decoupling of the motor from the link can be achieved to maximize the energy transfer into the distal link prior to launch. However, such continuous stiffness variation is complex and typically leads to oscillatory swing-up motions instead of clear launch sequences. To circumvent this issue, we investigate decoupling for speed maximization with a dedicated novel actuator concept denoted Bi-Stiffness Actuation. With this, it is possible to fully decouple the link from the joint mechanism by a switch-and-hold clutch and simultaneously keep the elastic energy stored. We show that with this novel paradigm, it is not only possible to reach the same optimal performance as with power-equivalent variable stiffness actuation, but even directly control the energy transfer timing. This is a major step forward compared to previous optimal control approaches, which rely on optimizing the full time-series control input.
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The previous fine-grained datasets mainly focus on classification and are often captured in a controlled setup, with the camera focusing on the objects. We introduce the first Fine-Grained Vehicle Detection (FGVD) dataset in the wild, captured from a moving camera mounted on a car. It contains 5502 scene images with 210 unique fine-grained labels of multiple vehicle types organized in a three-level hierarchy. While previous classification datasets also include makes for different kinds of cars, the FGVD dataset introduces new class labels for categorizing two-wheelers, autorickshaws, and trucks. The FGVD dataset is challenging as it has vehicles in complex traffic scenarios with intra-class and inter-class variations in types, scale, pose, occlusion, and lighting conditions. The current object detectors like yolov5 and faster RCNN perform poorly on our dataset due to a lack of hierarchical modeling. Along with providing baseline results for existing object detectors on FGVD Dataset, we also present the results of a combination of an existing detector and the recent Hierarchical Residual Network (HRN) classifier for the FGVD task. Finally, we show that FGVD vehicle images are the most challenging to classify among the fine-grained datasets.
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The task of reconstructing 3D human motion has wideranging applications. The gold standard Motion capture (MoCap) systems are accurate but inaccessible to the general public due to their cost, hardware and space constraints. In contrast, monocular human mesh recovery (HMR) methods are much more accessible than MoCap as they take single-view videos as inputs. Replacing the multi-view Mo- Cap systems with a monocular HMR method would break the current barriers to collecting accurate 3D motion thus making exciting applications like motion analysis and motiondriven animation accessible to the general public. However, performance of existing HMR methods degrade when the video contains challenging and dynamic motion that is not in existing MoCap datasets used for training. This reduces its appeal as dynamic motion is frequently the target in 3D motion recovery in the aforementioned applications. Our study aims to bridge the gap between monocular HMR and multi-view MoCap systems by leveraging information shared across multiple video instances of the same action. We introduce the Neural Motion (NeMo) field. It is optimized to represent the underlying 3D motions across a set of videos of the same action. Empirically, we show that NeMo can recover 3D motion in sports using videos from the Penn Action dataset, where NeMo outperforms existing HMR methods in terms of 2D keypoint detection. To further validate NeMo using 3D metrics, we collected a small MoCap dataset mimicking actions in Penn Action,and show that NeMo achieves better 3D reconstruction compared to various baselines.
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